TEST CATALOG ORDERING & RESULTS SPECIMEN HANDLING CUSTOMER SERVICE EDUCATION & INSIGHTS
Test Catalog

Test ID: F11NG    
Hemophilia C, F11 Gene, Next-Generation Sequencing, Varies

Useful For Suggests clinical disorders or settings where the test may be helpful

Genetic confirmation of a factor XI deficiency diagnosis with the identification of known or suspected pathogenic alterations in the F11 gene

 

Carrier testing for close family members of an individual with a factor XI deficiency diagnosis

 

This test is not intended for prenatal diagnosis

Genetics Test Information Provides information that may help with selection of the correct genetic test or proper submission of the test request

Testing Algorithm Delineates situations when tests are added to the initial order. This includes reflex and additional tests.

The clinical workup for factor XI deficiency begins with special coagulation testing for factor XI. See F_11 / Coagulation Factor XI Activity Assay, Plasma.

 

Genetic testing for factor XI deficiency is indicated if:

-Factor XI activity is reduced (less than 50% of normal)

-Acquired causes of factor XI have been excluded

Clinical Information Discusses physiology, pathophysiology, and general clinical aspects, as they relate to a laboratory test

Factor XI deficiency (FXID) is a bleeding diathesis that is also known as hemophilia C. FXID produces a bleeding disorder that is relatively mild, rarely spontaneous, and associated with certain sites of the body, namely the oral cavity, nasopharynx, and urinary tract. Bleeding frequency and severity are highest when trauma or certain surgical procedures involve tissues in these areas. Menorrhagia and nose bleeds are common.

 

Overall, in the general population, the prevalence of severe FXID is 1 per million. However, FXID is common in certain ethnic groups. In Ashkenazi Jews, severe deficiency is found in 1 in 450 people. Founder mutations are also found among French Basques and French individuals from Nantes. Hereditary FXID is typically inherited in an autosomal recessive manner. However, some rare alterations exert a dominant-negative effect or interfere with the functioning of normal factor XI (FXI), causing an autosomal dominant bleeding disorder.

 

FXID is a result of defects in the concentration or function of coagulation FXI, which is synthesized in the liver and circulates in blood plasma as an inactive zymogen. The role of activated FXI includes sustained activation of factor IX, leading to fibrin formation and clot stability, especially in tissues with high fibrinolytic activity, such as oral cavity, nasopharynx, and urinary tract. A significant deficiency in the amount of functional FXI can cause excessive bleeding in these tissues after trauma or certain surgical procedures.

 

FXID is defined as severe when FXI activity is less than 15% (15 U/dL). It is considered moderate when it is between 15% and 50% (15 to 50 U/dL). However, plasma FXI activity levels to do not correlate well with bleeding phenotype, in part activity levels appear unable to reflect true physiological activity of FXI (eg, p.Ser266Asn is associated with bleeding and defective FXI binding to platelets but is reported not affect aPTT). Some patients with 15% to 50% FXI activity present similarly to severely deficient patients, indicating contributing factors to disease severity, eg, the qualities of the specific alteration(s) underlying the disorder or the co-inheritance of other bleeding disorders. Of note, normal, full-term newborn infants or healthy premature infants may have decreased levels (greater than or equal to 10%) that may not reach adult levels for greater than or equal to 180 days after birth.

 

The F11 gene encodes FXI. Genetic testing for pathogenic alterations in F11 is indicated if FXI activity is below 50% of normal. Patients lacking FXI will also typically have very long activated partial thromboplastin times (aPTT).

 

Acquired FXID appears to be a rare complication of liver disease. Liver disease should be excluded prior to genetic testing.

Reference Values Describes reference intervals and additional information for interpretation of test results. May include intervals based on age and sex when appropriate. Intervals are Mayo-derived, unless otherwise designated. If an interpretive report is provided, the reference value field will state this.

An interpretive report will be provided

Interpretation Provides information to assist in interpretation of the test results

An interpretive report will be provided.

 

Evaluation and categorization of variants is performed using the most recent published American College of Medical Genetics and Genomics (ACMG) recommendations as a guideline. Variants are classified based on known, predicted, or possible pathogenicity and reported with interpretive comments detailing their potential or known significance.

 

Consultations with the Mayo Clinic Special Coagulation Clinic, Molecular Hematopathology Laboratory, or Thrombophilia Center are available for DNA diagnosis cases. This may be especially helpful in complex cases or in situations where the diagnosis is atypical or uncertain.

Cautions Discusses conditions that may cause diagnostic confusion, including improper specimen collection and handling, inappropriate test selection, and interfering substances

Clinical:

Some individuals may have a mutation that is not identified by the methods performed. The absence of a mutation, therefore, does not eliminate the possibility of factor XI deficiency. This assay does not distinguish between germline and somatic alterations, particularly with variant allele frequencies (VAF) significantly lower than 50%. Test results should be interpreted in context of clinical findings, family history, and other laboratory data. Misinterpretation of results may occur if the information provided is inaccurate or incomplete.

 

Technical Limitations:

Next-generation sequencing (NGS) may not detect all types of genetic variants. Additionally, rare polymorphisms may be present that could lead to false negative or positive results. Therefore test results should be interpreted in the context of activity and antigen measurements, clinical findings, family history, and other laboratory data. If results do not match clinical findings, consider alternative methods for analyzing these genes, such as Sanger sequencing or large deletion/duplication analysis. Misinterpretation of results may occur if the information provided is inaccurate or incomplete.

 

If multiple alterations are identified, NGS is not able to distinguish between alterations that are found in the same allele ("in cis") and alterations found on different alleles ("in trans"). This limitation may complicate diagnosis or classification and has implications for inheritance and genetic counseling. To resolve these cases, molecular results must be correlated with clinical history, activity and antigen measurements, and family studies.

 

Unless reported or predicted to cause disease, alterations found deep in the intron or alterations that do not result in an amino acid substitution are not reported. These and common polymorphisms identified for this patient are available upon request.

 

Reclassification of Variants Policy: At this time, it is not standard practice for the laboratory to systematically review likely pathogenic variants or variants of uncertain significance that are detected and reported. The laboratory encourages health care providers to contact the laboratory at any time to learn how the status of a particular variant may have changed over time.

Clinical Reference Recommendations for in-depth reading of a clinical nature

1. Palla R, Peyvandi F, Shapiro AD: Rare bleeding disorders: diagnosis and treatment. Blood. 2015;125(13):2052-2061

2. Wheeler A, Gailani D: Why factor XI deficiency is a clinical concern. Expert Review of Hematology. 2016;9(7):629-637

3. Bolton-Maggs, P: Factor XI deficiency-resolving the enigma? Hematology Am Soc Hematol Educ Program. 2009;97-105

4. Emsley J, McEwan PA, Gailani D: Structure and function of factor XI. Blood. 2010;115(13):2569-2577

5. Gailani D, Geng Y, Verhamme I, et al: The mechanism underlying activation of factor IX by factor XIa. Thromb Res. 2014;133 Suppl 1:S48-51

6. Berber E: Molecular characterization of FXI deficiency. Clin Appl Thromb Hemost. 2011;17(1):27-32

Special Instructions Library of PDFs including pertinent information and forms related to the test